Whenever I have encountered the rotating wave approximation, I have seen "the terms that we are neglecting correspond to rapid oscillations in the interaction Hamiltonian, so they will average to 0 in a reasonable time scale" as the justification for its use. However, it is not completely clear to me why does this justify that the Hamiltonian that we obtain is a good approximation of the original one, and I was wondering if there is a more rigorous version of the justification, whether it is for a particular system, or in a more general case.
As an example, something that would be a satisfying answer would be a result of the form "If you consider an arbitrary state of the system and any time t large enough, and evolve the system according to the RWA Hamiltonian, we obtain with high probability a state close to the one we would obtain under evolution of the original Hamiltonian". "t large enough", "close" and "high probability" would preferably have some good quantitative description.
Answer
The rotating wave approximation (RWA) is well justified in a regime of a small perturbation. In this limit you can neglect the so-called Bloch-Siegert and Stark shifts. You can find an explanation in this paper. But, in order to make this explanation self-contained, I will give an idea with the following model
$$H=\Delta\sigma_3+V_0\sin(\omega t)\sigma_1$$
being, as usual $\sigma_i$ the Pauli matrices. You can easily work out a small perturbation series for this Hamiltonian working in the interaction picture with
$$H_I=e^{-\frac{i}{\hbar}\sigma_3t}V_0\sin(\omega t)\sigma_1e^{\frac{i}{\hbar}\sigma_3t}$$
producing, with a Dyson series, the following next-to-leading order correction
$${\cal T}\exp\left[-\frac{i}{\hbar}\int_0^tH_I(t')dt'\right]=I-\frac{i}{\hbar}\int_0^t dt' V_0\sin(\omega t')\sigma_1e^{\frac{2i}{\hbar}\Delta\sigma_3t'}+\ldots.$$
Now, let us suppose that your system is in the eignstate $|0\rangle$ of the unperturbed Hamiltonian. You will get
$$|\psi(t)\rangle=|0\rangle-\frac{i}{\hbar}\int_0^t dt' V_0\sin(\omega t')e^{-\frac{2i}{\hbar}\Delta t'}\sigma_1|0\rangle+\ldots$$ $$=|0\rangle-\frac{1}{2\hbar}\int_0^t dt' V_0\left(e^{i\omega t'-\frac{2i}{\hbar}\Delta t'}-e^{-i\omega t'-\frac{2i}{\hbar}\Delta t'}\right)\sigma_1|0\rangle$$
Now, very near the resonance $\omega\approx2\Delta$, one term is overwhelming large with respect to the other and one can write down
$$|\psi\rangle\approx|0\rangle-\frac{V_0}{2\hbar}t\sigma_1|0\rangle+\ldots.$$
but in the original Hamiltonian this boils down to
$$H_I=V_0\sigma_1\sin(\omega t)\left(\cos(2\Delta t)+i\sigma_3\sin(2\Delta t)\right)$$ $$=\frac{V_0}{2}\sigma_1\left(\sin((\omega-2\Delta)t)+\sin((\omega+2\Delta)t)\right)$$ $$+\frac{V_0}{2}\sigma_2\left(\cos((\omega-2\Delta)t)-\cos((\omega+2\Delta)t)\right)$$ $$\approx \frac{V_0}{2}\sigma_2$$
with all the counter-rotating terms properly neglected with the condition $\omega\approx 2\Delta$ applied. It is essential to emphasize that, as the applied field increases, this approximation becomes even less reliable and it is just the leading order of a perturbation series in a near-resonance regime.
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